Stem-loop pny-mir-205-1

Accession

MI0034829

Description

Pundamilia nyererei pny-mir-205-1 precursor miRNA

Sequence

175813 reads, 15163.0 reads per million, 7 experiments

UCCUUCAUUCCACCGGAGUCUGuguaaagugcuaaucaGAUUUCAGUGGUUUGAAGAGUA
..(((((..((((.((((((((..((......))..)))))))).))))..)))))....

Structure

--UC     UU    C        ug  aa 
    CUUCA  CCAC GGAGUCUG  ua  g
    |||||  |||| ||||||||  ||   
    GAAGU  GGUG CUUUAGac  au  u
AUGA     UU    A        ua  cg 

Annotation confidence High

Genome context

JH419239.1: 1954757-1954816 [-]

Mature pny-miR-205-5p

• Accession: MIMAT0042873
• Description: Pundamilia nyererei pny-miR-205-5p mature miRNA
• Sequence: 1 - UCCUUCAUUCCACCGGAGUCUG - 22
• Evidence: experimental ; Illumina [1]

Mature pny-miR-205-1-3p

• Accession: MIMAT0060289
• Description: Pundamilia nyererei pny-miR-205-1-3p mature miRNA
• Sequence: 39 - GAUUUCAGUGGUUUGAAGAGUA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381