Stem-loop pny-mir-222-1

Accession

MI0034830

Description

Pundamilia nyererei pny-mir-222-1 precursor miRNA

Sequence

157247 reads, 13695.0 reads per million, 7 experiments

UGCUCAGUAGUCAGUGUAGAUCcuguggggcuggcagcAGCUACAUCUGGCUACUGGGUCUC
.((((((((((((((((((...((((.......))))...))))).)))))))))))))...

Structure

--U             -     AUC    gg 
   GCUCAGUAGUCAG UGUAG   cugu  g
   ||||||||||||| |||||   ||||  g
   UGGGUCAUCGGUC ACAUC   gacg  c
CUC             U     GAc    gu 

Annotation confidence High

Genome context

JH419245.1: 1651945-1652006 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-222-1

Mature pny-miR-222-1-5p

• Accession: MIMAT0060291
• Description: Pundamilia nyererei pny-miR-222-1-5p mature miRNA
• Sequence: 1 - UGCUCAGUAGUCAGUGUAGAUC - 22
• Evidence: experimental ; Illumina [1]

Mature pny-miR-222-3p

• Accession: MIMAT0042874
• Description: Pundamilia nyererei pny-miR-222-3p mature miRNA
• Sequence: 39 - AGCUACAUCUGGCUACUGGGUCUC - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381