Stem-loop pny-mir-22a

Accession

MI0034831

Description

Pundamilia nyererei pny-mir-22a precursor miRNA

Sequence

289173 reads, 25273.0 reads per million, 7 experiments

AGUUCUUCACUGGCAAGCUUUAuguccucauguaccagcuaAAGCUGCCAGCUGAAGAACUGU
(((((((((((((((.((((((.((............)))))))))))))).)))))))))..

Structure

--         -      A      u  ccuca 
  AGUUCUUCA CUGGCA GCUUUA gu     u
  ||||||||| |||||| |||||| ||      
  UCAAGAAGU GACCGU CGAAau cg     g
UG         C      -      -  accau 

Annotation confidence High

Genome context

JH419208.1: 5980678-5980740 [+]

Mature pny-miR-22a-5p

• Accession: MIMAT0060293
• Description: Pundamilia nyererei pny-miR-22a-5p mature miRNA
• Sequence: 1 - AGUUCUUCACUGGCAAGCUUUA - 22
• Evidence: experimental ; Illumina [1]

Mature pny-miR-22a-3p

• Accession: MIMAT0042875
• Description: Pundamilia nyererei pny-miR-22a-3p mature miRNA
• Sequence: 42 - AAGCUGCCAGCUGAAGAACUGU - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381