Stem-loop pny-mir-135a

Accession

MI0034832

Description

Pundamilia nyererei pny-mir-135a precursor miRNA

Sequence

9395 reads, 699.0 reads per million, 7 experiments

UAUGGCUUUUUAUUCCUAUCUGAcuguacuuaugguucAUAUAGGGAUGGAAGCCAUGCA
((((((((((.((((((((.(((((((....)))).))).))))))))))))))))))..

Structure

--          U        C   -    a 
  UAUGGCUUUU AUUCCUAU UGA cugu c
  |||||||||| |||||||| ||| ||||  
  GUACCGAAGG UAGGGAUA Acu ggua u
AC          -        U   u    u 

Annotation confidence High

Genome context

JH419244.1: 885761-885820 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-135a

Mature pny-miR-135a-5p

• Accession: MIMAT0042876
• Description: Pundamilia nyererei pny-miR-135a-5p mature miRNA
• Sequence: 1 - UAUGGCUUUUUAUUCCUAUCUGA - 23
• Evidence: experimental ; Illumina [1]

Mature pny-miR-135a-3p

• Accession: MIMAT0060294
• Description: Pundamilia nyererei pny-miR-135a-3p mature miRNA
• Sequence: 39 - AUAUAGGGAUGGAAGCCAUGCA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381