Stem-loop pny-let-7d-2

Accession

MI0034834

Description

Pundamilia nyererei pny-let-7d-2 precursor miRNA

Sequence

102884 reads, 9037.0 reads per million, 7 experiments

UGAGGUAGUUGGUUGUAUGGUUucgcauaauaaaaagccuggagauaaCUGUACAACCUUCUAGCUUUCC
.(((.(((..((((((((((((((...................)).))))))))))))..))).)))...

Structure

--U   G   UU            -  gcauaaua 
   GAG UAG  GGUUGUAUGGUU uc        a
   ||| |||  |||||||||||| ||        a
   UUC AUC  CCAACAUGUCaa ag        a
CCU   G   UU            u  agguccga 

Annotation confidence High

Genome context

JH419307.1: 647756-647825 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-let-7d-2

Mature pny-let-7d-5p

• Accession: MIMAT0042877
• Description: Pundamilia nyererei pny-let-7d-5p mature miRNA
• Sequence: 1 - UGAGGUAGUUGGUUGUAUGGUU - 22
• Evidence: experimental ; Illumina [1]

Mature pny-let-7d-3p

• Accession: MIMAT0060295
• Description: Pundamilia nyererei pny-let-7d-3p mature miRNA
• Sequence: 49 - CUGUACAACCUUCUAGCUUUCC - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381