Stem-loop pny-mir-30b

Accession

MI0034836

Description

Pundamilia nyererei pny-mir-30b precursor miRNA

Sequence

64729 reads, 5559.0 reads per million, 7 experiments

UGUAAACAUCCUACACUCUCAGCUguguugucauggagCUGGGAGAGGGGUGUUUACGCU
.(((((((((((...(((((((((.(((....))).))))))))).)))))))))))...

Structure

--U           ACA         g   u 
   GUAAACAUCCU   CUCUCAGCU ugu g
   |||||||||||   ||||||||| |||  
   CAUUUGUGGGG   GAGGGUCga gua u
UCG           --A         g   c 

Annotation confidence High

Genome context

JH419233.1: 1504263-1504322 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-30b

Mature pny-miR-30b-5p

• Accession: MIMAT0042878
• Description: Pundamilia nyererei pny-miR-30b-5p mature miRNA
• Sequence: 1 - UGUAAACAUCCUACACUCUCAGCU - 24
• Evidence: experimental ; Illumina [1]

Mature pny-miR-30b-3p

• Accession: MIMAT0060296
• Description: Pundamilia nyererei pny-miR-30b-3p mature miRNA
• Sequence: 39 - CUGGGAGAGGGGUGUUUACGCU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381