Stem-loop pny-mir-125a-1

Accession

MI0034839

Description

Pundamilia nyererei pny-mir-125a-1 precursor miRNA

Sequence

154392 reads, 14151.0 reads per million, 7 experiments

UCCCUGAGACCCUUAACCUGUGAugauaugaaaggucaCAGGUGAGGUCCUUGGGAACA
((((.(((..(((((.((((((((..........)))))))))))))..)))))))...

Structure

---    U   AC     A        gaua 
   UCCC GAG  CCUUA CCUGUGAu    u
   |||| |||  ||||| ||||||||     
   AGGG UUC  GGAGU GGACacug    g
ACA    -   CU     -        gaaa 

Annotation confidence High

Genome context

JH419307.1: 643741-643799 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-125a-1

Mature pny-miR-125a-5p

• Accession: MIMAT0042881
• Description: Pundamilia nyererei pny-miR-125a-5p mature miRNA
• Sequence: 1 - UCCCUGAGACCCUUAACCUGUGA - 23
• Evidence: experimental ; Illumina [1]

Mature pny-miR-125a-1-3p

• Accession: MIMAT0060300
• Description: Pundamilia nyererei pny-miR-125a-1-3p mature miRNA
• Sequence: 39 - CAGGUGAGGUCCUUGGGAACA - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381