Stem-loop pny-mir-214-2

Accession

MI0034842

Description

Pundamilia nyererei pny-mir-214-2 precursor miRNA

Sequence

31299 reads, 2674.0 reads per million, 7 experiments

ugccuaucuacacuugcugugcagaauauccuccaaccuguACAGCAGGCACAGACAGGCAGA
(((((.(((...((((((((((((.............))))))))))))...))).)))))..

Structure

--     a   aca            aauau 
  ugccu ucu   cuugcugugcag     c
  ||||| |||   ||||||||||||     c
  ACGGA AGA   GGACGACAuguc     u
AG     C   CAC            caacc 

Annotation confidence Not enough data

Genome context

JH419320.1: 891194-891256 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pny-mir-214-2

Mature pny-miR-214-3p

• Accession: MIMAT0042880
• Description: Pundamilia nyererei pny-miR-214-3p mature miRNA
• Sequence: 42 - ACAGCAGGCACAGACAGGCAGA - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381