Stem-loop pny-mir-19b-1

Accession

MI0034849

Description

Pundamilia nyererei pny-mir-19b-1 precursor miRNA

Sequence

3178 reads, 225.0 reads per million, 7 experiments

uuuugcugguuugcauucagcuuuaaugguguuugcUGUGCAAAUCCAUGCAAAACUG
(((((((((((((((..((((.............)))))))))).))).))))))...

Structure

---      -   -      uu    uuuaa 
   uuuugc ugg uuugca  cagc     u
   |||||| ||| ||||||  ||||     g
   AAAACG ACC AAACGU  GUcg     g
GUC      U   U      --    uuugu 

Annotation confidence Not enough data

Genome context

JH419216.1: 2882970-2883027 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from pny-mir-19b-1

Mature pny-miR-19b-3p

• Accession: MIMAT0042887
• Description: Pundamilia nyererei pny-miR-19b-3p mature miRNA
• Sequence: 37 - UGUGCAAAUCCAUGCAAAACUG - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381