Stem-loop pny-mir-99b

Accession

MI0034850

Description

Pundamilia nyererei pny-mir-99b precursor miRNA

Sequence

95665 reads, 8413.0 reads per million, 7 experiments

AACCCGUAGAUCCGAUCUUGUGgcgaaucugacagcaCAAGCUCGCCUCUGUGGGUCUU
.(((((((((..(((.((((((.............)))))).)))..)))))))))...

Structure

--A         UC   U      gcgaa 
   ACCCGUAGA  CGA CUUGUG     u
   |||||||||  ||| ||||||     c
   UGGGUGUCU  GCU GAACac     u
UUC         CC   C      gacag 

Annotation confidence High

Genome context

JH419302.1: 2116766-2116824 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pny-mir-99b

Mature pny-miR-99b-5p

• Accession: MIMAT0042888
• Description: Pundamilia nyererei pny-miR-99b-5p mature miRNA
• Sequence: 1 - AACCCGUAGAUCCGAUCUUGUG - 22
• Evidence: experimental ; Illumina [1]

Mature pny-miR-99b-3p

• Accession: MIMAT0060309
• Description: Pundamilia nyererei pny-miR-99b-3p mature miRNA
• Sequence: 38 - CAAGCUCGCCUCUGUGGGUCUU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381