Stem-loop pny-mir-221-1

Accession

MI0034851

Description

Pundamilia nyererei pny-mir-221-1 precursor miRNA

Sequence

25951 reads, 2203.0 reads per million, 7 experiments

ACCUGGCAUACAAUGUAGAUUUCUGugugguucaauucuacAGCUACAUUGUCUGCUGGGUUUC
((((((((.(((((((((....(((((.((......)))))))))))))))).))))))))...

Structure

---        U         AUUU     u  uu 
   ACCUGGCA ACAAUGUAG    CUGug gg  c
   |||||||| |||||||||    ||||| ||   
   UGGGUCGU UGUUACAUC    GAcau cu  a
CUU        C         ----     -  ua 

Annotation confidence High

Genome context

JH419365.1: 536172-536235 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-221-1

Mature pny-miR-221-1-5p

• Accession: MIMAT0060310
• Description: Pundamilia nyererei pny-miR-221-1-5p mature miRNA
• Sequence: 1 - ACCUGGCAUACAAUGUAGAUUUCUG - 25
• Evidence: experimental ; Illumina [1]

Mature pny-miR-221-3p

• Accession: MIMAT0042889
• Description: Pundamilia nyererei pny-miR-221-3p mature miRNA
• Sequence: 42 - AGCUACAUUGUCUGCUGGGUUUC - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381