miRBase entry: pny-mir-125b-3

Stem-loop pny-mir-125b-3


Accession
MI0034852
Description
Pundamilia nyererei pny-mir-125b-3 precursor miRNA


Sequence

171359 reads, 15089.0 reads per million, 7 experiments
UCCCUGAGACCCUAACUUGUGAgcucucuugaugaaaaaucACGGGUUAGGCUCUUGGGACGC
..(((((((.((((((((((((....((.....))....)))))))))))).)))))))....

Structure
--UC       C            gcuc  u 
    CCUGAGA CCUAACUUGUGA    uc u
    ||||||| ||||||||||||    || g
    GGGUUCU GGAUUGGGCAcu    ag a
CGCA       C            aaaa  u 


Annotation confidence High
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Genome context
JH419302.1: 2108798-2108860 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from pny-mir-125b-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pny-miR-125b-5p

Accession MIMAT0042890
Description Pundamilia nyererei pny-miR-125b-5p mature miRNA
Sequence 1 - UCCCUGAGACCCUAACUUGUGA - 22
Evidence experimental
Illumina [1]

Mature pny-miR-125b-3-3p

Accession MIMAT0060312
Description Pundamilia nyererei pny-miR-125b-3-3p mature miRNA
Sequence 42 - ACGGGUUAGGCUCUUGGGACGC - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381