Stem-loop pny-mir-17-2

Accession

MI0034856

Description

Pundamilia nyererei pny-mir-17-2 precursor miRNA

Sequence

6360 reads, 527.0 reads per million, 7 experiments

CAAAGUGCUUACAGUGCAGGUAguuuuguucaauucuACUGCAGUGAAGGCACUUUC
.(((((((((.((.(((((.(((..((....))..)))))))).)).))))))))).

Structure

C         A  G     G   uu  g 
 AAAGUGCUU CA UGCAG UAg  uu u
 ||||||||| || ||||| |||  ||  
 UUUCACGGA GU ACGUC Auc  aa u
C         A  G     -   uu  c 

Annotation confidence High

Genome context

JH419214.1: 5903295-5903351 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from pny-mir-17-2

Mature pny-miR-17-5p

• Accession: MIMAT0042893
• Description: Pundamilia nyererei pny-miR-17-5p mature miRNA
• Sequence: 1 - CAAAGUGCUUACAGUGCAGGUA - 22
• Evidence: experimental ; Illumina [1]

Mature pny-miR-17-2-3p

• Accession: MIMAT0060316
• Description: Pundamilia nyererei pny-miR-17-2-3p mature miRNA
• Sequence: 38 - ACUGCAGUGAAGGCACUUUC - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381