Stem-loop pny-mir-221-2

Accession

MI0034858

Description

Pundamilia nyererei pny-mir-221-2 precursor miRNA

Sequence

24742 reads, 2107.0 reads per million, 7 experiments

ACCUGGCAUACAGUGUAGGAAUCUGugugugucagucuacAGCUACAUUGUCUGCUGGGUUUC
((((((((.(((((((((....(((((.(.......))))))))))))))).))))))))...

Structure

---        U         GAAU     u ug 
   ACCUGGCA ACAGUGUAG    CUGug g  u
   |||||||| |||||||||    ||||| |  c
   UGGGUCGU UGUUACAUC    GAcau c  a
CUU        C         ----     - ug 

Annotation confidence High

Genome context

JH419245.1: 1652334-1652396 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-221-2

Mature pny-miR-221-2-5p

• Accession: MIMAT0060311
• Description: Pundamilia nyererei pny-miR-221-2-5p mature miRNA
• Sequence: 1 - ACCUGGCAUACAGUGUAGGAAUCUG - 25
• Evidence: experimental ; Illumina [1]

Mature pny-miR-221-3p

• Accession: MIMAT0042889
• Description: Pundamilia nyererei pny-miR-221-3p mature miRNA
• Sequence: 41 - AGCUACAUUGUCUGCUGGGUUUC - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381