Stem-loop pny-mir-19d

Accession

MI0034873

Description

Pundamilia nyererei pny-mir-19d precursor miRNA

Sequence

1896 reads, 148.0 reads per million, 7 experiments

AGCUUUGCAGGGUGGGCAGUCAGCcugugugcauaaggaccagcUGUGCAAACCCAUGCAAAACUG
((.((((((((((..(((..((((.((.((.(....).)))))))))))..)))).)))))).)).

Structure

-  C      -    GG   GU    c  u  g a 
 AG UUUGCA GGGU  GCA  CAGC ug gu c u
 || |||||| ||||  |||  |||| || || |  
 UC AAACGU CCCA  CGU  GUcg ac ca g a
G  A      A    AA   --    -  -  g a 

Annotation confidence High

Genome context

JH419213.1: 70175-70240 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from pny-mir-19d

Mature pny-miR-19d-5p

• Accession: MIMAT0060329
• Description: Pundamilia nyererei pny-miR-19d-5p mature miRNA
• Sequence: 1 - AGCUUUGCAGGGUGGGCAGUCAGC - 24
• Evidence: experimental ; Illumina [1]

Mature pny-miR-19d-3p

• Accession: MIMAT0042902
• Description: Pundamilia nyererei pny-miR-19d-3p mature miRNA
• Sequence: 45 - UGUGCAAACCCAUGCAAAACUG - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381