Stem-loop pny-mir-128-1

Accession

MI0034874

Description

Pundamilia nyererei pny-mir-128-1 precursor miRNA

Sequence

571747 reads, 50409.0 reads per million, 7 experiments

CGGGGCCGGGACGCUGUCUGAGAggccucuaugaaucUCACAGUGAACCGGUCUCUUU
.((((((((..((((((..((((..(......)..))))))))))..))))))))...

Structure

--C        GA      CU    gg cu 
   GGGGCCGG  CGCUGU  GAGA  c  c
   ||||||||  ||||||  ||||  |   
   CUCUGGCC  GUGACA  CUcu  g  u
UUU        AA      --    aa ua 

Annotation confidence High

Genome context

JH419299.1: 2118949-2119006 [+]

Mature pny-miR-128-1-5p

• Accession: MIMAT0060330
• Description: Pundamilia nyererei pny-miR-128-1-5p mature miRNA
• Sequence: 1 - CGGGGCCGGGACGCUGUCUGAGA - 23
• Evidence: experimental ; Illumina [1]

Mature pny-miR-128-3p

• Accession: MIMAT0042903
• Description: Pundamilia nyererei pny-miR-128-3p mature miRNA
• Sequence: 38 - UCACAGUGAACCGGUCUCUUU - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381