Stem-loop pny-mir-216b

Accession

MI0034878

Description

Pundamilia nyererei pny-mir-216b precursor miRNA

Literature search

1 open access papers mention pny-mir-216b
(3 sentences)

Sequence

84383 reads, 7509.0 reads per million, 7 experiments

UAAUCUCUGCAGGCAACUGUGAuggugcuuuauuuucucACAAUCACCUGGAGAGAUUCUG
.(((((((.((((....(((((.((..........)))))))....)))).)))))))...

Structure

--U       G    CAAC     u  ugcu 
   AAUCUCU CAGG    UGUGA gg    u
   ||||||| ||||    ||||| ||     
   UUAGAGA GUCC    ACAcu cu    u
GUC       G    ACUA     -  uuua 

Annotation confidence High

Genome context

JH419354.1: 1380899-1380959 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-216b

Mature pny-miR-216b-5p

• Accession: MIMAT0042904
• Description: Pundamilia nyererei pny-miR-216b-5p mature miRNA
• Sequence: 1 - UAAUCUCUGCAGGCAACUGUGA - 22
• Evidence: experimental ; Illumina [1]

Mature pny-miR-216b-3p

• Accession: MIMAT0060332
• Description: Pundamilia nyererei pny-miR-216b-3p mature miRNA
• Sequence: 40 - ACAAUCACCUGGAGAGAUUCUG - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381