Stem-loop pny-mir-144

Accession

MI0034880

Description

Pundamilia nyererei pny-mir-144 precursor miRNA

Sequence

3525 reads, 278.0 reads per million, 7 experiments

AGGAUAUCAUCUUAUACUGUAAGUuuaaaaaagagacaCUACAGUAUAGAUGAUGUACU
...(((((((((.((((((((.((((.......))))..)))))))))))))))))...

Structure

AGG         U        -A    aa 
   AUAUCAUCU AUACUGUA  GUuu  a
   ||||||||| ||||||||  ||||  a
   UGUAGUAGA UAUGACAU  caga  a
UCA         -        Ca    ga 

Annotation confidence Medium

Genome context

JH419285.1: 653561-653619 [+]

Mature pny-miR-144-5p

• Accession: MIMAT0042906
• Description: Pundamilia nyererei pny-miR-144-5p mature miRNA
• Sequence: 1 - AGGAUAUCAUCUUAUACUGUAAGU - 24
• Evidence: experimental ; Illumina [1]

Mature pny-miR-144-3p

• Accession: MIMAT0060334
• Description: Pundamilia nyererei pny-miR-144-3p mature miRNA
• Sequence: 39 - CUACAGUAUAGAUGAUGUACU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381