Stem-loop pny-mir-200a

Accession

MI0034889

Description

Pundamilia nyererei pny-mir-200a precursor miRNA

Literature search

1 open access papers mention pny-mir-200a
(4 sentences)

Sequence

34082 reads, 2951.0 reads per million, 7 experiments

CAUCUUACCUGACAGUGCUGGAcuguacuacuguuguucUAACACUGUCUGGUAACGAUGUU
(((((((((.(((((((.((((....((....))...)))).))))))).))))).))))..

Structure

--    -     U       C    cugu  u 
  CAUC UUACC GACAGUG UGGA    ac a
  |||| ||||| ||||||| ||||    ||  
  GUAG AAUGG CUGUCAC AUcu    ug c
UU    C     U       A    -ugu  u 

Annotation confidence High

Genome context

JH419244.1: 2587205-2587266 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pny-mir-200a

Mature pny-miR-200a-5p

• Accession: MIMAT0060341
• Description: Pundamilia nyererei pny-miR-200a-5p mature miRNA
• Sequence: 1 - CAUCUUACCUGACAGUGCUGGA - 22
• Evidence: experimental ; Illumina [1]

Mature pny-miR-200a-3p

• Accession: MIMAT0042913
• Description: Pundamilia nyererei pny-miR-200a-3p mature miRNA
• Sequence: 40 - UAACACUGUCUGGUAACGAUGUU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381