Stem-loop pny-mir-27a

Accession

MI0034890

Description

Pundamilia nyererei pny-mir-27a precursor miRNA

Sequence

20403 reads, 1792.0 reads per million, 7 experiments

AGGACUUAGCUCGCUCCGUGAACAGuucagugaaguccugugUUCACAGUGGCUAAGUUCCGC
.(((((((((.((((..(((((((...(((.(....))))))))))))))))))))))))...

Structure

--A         U    CC       Guu   u a 
   GGACUUAGC CGCU  GUGAACA   cag g a
   ||||||||| ||||  |||||||   ||| |  
   CUUGAAUCG GUGA  CACUUgu   guc c g
CGC         -    --       ---   - u 

Annotation confidence High

Genome context

JH419326.1: 1516378-1516440 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from pny-mir-27a

Mature pny-miR-27a-5p

• Accession: MIMAT0060342
• Description: Pundamilia nyererei pny-miR-27a-5p mature miRNA
• Sequence: 1 - AGGACUUAGCUCGCUCCGUGAACAG - 25
• Evidence: experimental ; Illumina [1]

Mature pny-miR-27a-3p

• Accession: MIMAT0042914
• Description: Pundamilia nyererei pny-miR-27a-3p mature miRNA
• Sequence: 43 - UUCACAGUGGCUAAGUUCCGC - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381