Stem-loop pny-mir-138-3

Accession

MI0034894

Description

Pundamilia nyererei pny-mir-138-3 precursor miRNA

Sequence

1072 reads, 85.0 reads per million, 7 experiments

AGCUGGUGUUGUGAAUCAGGCCGccacaguccagggaccgGCUACUUCCCAACACCAGGGUc
..(((((((((.(((...(((((((.(......)))..)))))..))).)))))))))....

Structure

--AG         U   UCA     --  a ag 
    CUGGUGUUG GAA   GGCCG  cc c  u
    ||||||||| |||   |||||  || |   
    GACCACAAC CUU   UCGgc  gg g  c
cUGG         C   -CA     ca  - ac 

Annotation confidence High

Genome context

JH419235.1: 4709358-4709419 [-]

Mature pny-miR-138-5p

• Accession: MIMAT0042916
• Description: Pundamilia nyererei pny-miR-138-5p mature miRNA
• Sequence: 1 - AGCUGGUGUUGUGAAUCAGGCCG - 23
• Evidence: experimental ; Illumina [1]

Mature pny-miR-138-3-3p

• Accession: MIMAT0060345
• Description: Pundamilia nyererei pny-miR-138-3-3p mature miRNA
• Sequence: 41 - GCUACUUCCCAACACCAGGGU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381