Stem-loop pny-mir-142-2

Accession

MI0034895

Description

Pundamilia nyererei pny-mir-142-2 precursor miRNA

Sequence

672 reads, 49.0 reads per million, 7 experiments

CAUAAAGUAGAAAGCACUACUaaacuuuacuacacaguGUAGUGUUUCCUACUUUAUGGAug
((((((((((.(((((((((..................))))))))).))))))))))....

Structure

----          A         Uaaacuuu 
    CAUAAAGUAG AAGCACUAC        a
    |||||||||| |||||||||         
    GUAUUUCAUC UUUGUGAUG        c
guAG          C         ugacacau 

Annotation confidence Medium

Genome context

JH419829.1: 107712-107773 [-]

Mature pny-miR-142-5p

• Accession: MIMAT0042917
• Description: Pundamilia nyererei pny-miR-142-5p mature miRNA
• Sequence: 1 - CAUAAAGUAGAAAGCACUACU - 21
• Evidence: experimental ; Illumina [1]

Mature pny-miR-142-3p

• Accession: MIMAT0060346
• Description: Pundamilia nyererei pny-miR-142-3p mature miRNA
• Sequence: 39 - GUAGUGUUUCCUACUUUAUGGA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381