Stem-loop pny-mir-27e-1

Accession

MI0034897

Description

Pundamilia nyererei pny-mir-27e-1 precursor miRNA

Sequence

22785 reads, 1992.0 reads per million, 7 experiments

agagcuuagcuaauuggugagcauugaucccugcuauguguugUUCACAGUGGCUAAGUUCAGU
.(((((((((((....(((((((..................)))))))..)))))))))))...

Structure

--a           auug       uugauccc 
   gagcuuagcua    gugagca        u
   |||||||||||    |||||||         
   CUUGAAUCGGU    CACUUgu        g
UGA           --GA       uguguauc 

Annotation confidence Not enough data

Genome context

JH419388.1: 1078837-1078900 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pny-mir-27e-1

Mature pny-miR-27e-3p

• Accession: MIMAT0042919
• Description: Pundamilia nyererei pny-miR-27e-3p mature miRNA
• Sequence: 44 - UUCACAGUGGCUAAGUUCAGU - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381