miRBase entry: pny-mir-106

Stem-loop pny-mir-106


Accession
MI0034898
Description
Pundamilia nyererei pny-mir-106 precursor miRNA


Sequence

3891 reads, 328.0 reads per million, 7 experiments
UAAAGUGCUUACAGUGCAGGUAGugaugauaaucuggccuACUGCAUUGUGAGCACUUCUUUC
..(((((((((((((((((...(((((....)))..))...))))))))))))))))).....

Structure
---UA                 GUA  --   g 
     AAGUGCUUACAGUGCAG   Gu  gau a
     |||||||||||||||||   ||  |||  
     UUCACGAGUGUUACGUC   cg  cua u
CUUUC                 Auc  gu   a 


Annotation confidence High
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Genome context
JH419213.1: 69744-69806 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from pny-mir-106
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pny-miR-106-5p

Accession MIMAT0042920
Description Pundamilia nyererei pny-miR-106-5p mature miRNA
Sequence 1 - UAAAGUGCUUACAGUGCAGGUAG - 23
Evidence experimental
Illumina [1]

Mature pny-miR-106-3p

Accession MIMAT0060349
Description Pundamilia nyererei pny-miR-106-3p mature miRNA
Sequence 41 - ACUGCAUUGUGAGCACUUCUUUC - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381