Stem-loop pny-mir-200b

Accession

MI0034899

Description

Pundamilia nyererei pny-mir-200b precursor miRNA

Literature search

1 open access papers mention pny-mir-200b
(2 sentences)

Sequence

45858 reads, 3896.0 reads per million, 7 experiments

CAUCUUACGAGGCAGCAUUGGAuaucaucacuuucucUAAUACUGCCUGGUAAUGAUGAU
((((((((.((((((.((((((.............)))))).)))))).)))).))))..

Structure

--    -    G      C      uauca 
  CAUC UUAC AGGCAG AUUGGA     u
  |||| |||| |||||| ||||||     c
  GUAG AAUG UCCGUC UAAUcu     a
UA    U    G      A      cuuuc 

Annotation confidence High

Genome context

JH419244.1: 2587393-2587452 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pny-mir-200b

Mature pny-miR-200b-5p

• Accession: MIMAT0060350
• Description: Pundamilia nyererei pny-miR-200b-5p mature miRNA
• Sequence: 1 - CAUCUUACGAGGCAGCAUUGGA - 22
• Evidence: experimental ; Illumina [1]

Mature pny-miR-200b-3p

• Accession: MIMAT0042921
• Description: Pundamilia nyererei pny-miR-200b-3p mature miRNA
• Sequence: 38 - UAAUACUGCCUGGUAAUGAUGAU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381