Stem-loop pny-mir-23b

Accession

MI0034903

Description

Pundamilia nyererei pny-mir-23b precursor miRNA

Sequence

7880 reads, 689.0 reads per million, 7 experiments

GGGUUCCUGGCGUGCUGAUUUgugacuuaugauaaaAUCACAUUGCCAGGGAUUACC
.(((((((((((((.((((((.............)))))))).)))))))))))...

Structure

--G           -  C      gugac 
   GGUUCCUGGCG UG UGAUUU     u
   ||||||||||| || ||||||     u
   UUAGGGACCGU AC ACUAaa     a
CCA           U  -      auagu 

Annotation confidence High

Genome context

JH419211.1: 118724-118780 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pny-mir-23b

Mature pny-miR-23b-5p

• Accession: MIMAT0060352
• Description: Pundamilia nyererei pny-miR-23b-5p mature miRNA
• Sequence: 1 - GGGUUCCUGGCGUGCUGAUUU - 21
• Evidence: experimental ; Illumina [1]

Mature pny-miR-23b-3p

• Accession: MIMAT0042924
• Description: Pundamilia nyererei pny-miR-23b-3p mature miRNA
• Sequence: 37 - AUCACAUUGCCAGGGAUUACC - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381