Stem-loop pny-mir-460

Accession

MI0034909

Description

Pundamilia nyererei pny-mir-460 precursor miRNA

Sequence

354 reads, 27.0 reads per million, 7 experiments

CCUGCAUUGUACACACUGUGCguauaaaugucauaagCACAGCGCAUACAAUGUGGAUG
.((((((((((..(.((((((.(((.......))).)))))).)..))))))))))...

Structure

--C          CA A      g   aa 
   CUGCAUUGUA  C CUGUGC uau  a
   ||||||||||  | |||||| |||  u
   GGUGUAACAU  G GACACg aua  g
GUA          AC C      a   cu 

Annotation confidence High

Genome context

JH419209.1: 8865309-8865367 [-]

Mature pny-miR-460-5p

• Accession: MIMAT0060355
• Description: Pundamilia nyererei pny-miR-460-5p mature miRNA
• Sequence: 1 - CCUGCAUUGUACACACUGUGC - 21
• Evidence: experimental ; Illumina [1]

Mature pny-miR-460-3p

• Accession: MIMAT0042930
• Description: Pundamilia nyererei pny-miR-460-3p mature miRNA
• Sequence: 38 - CACAGCGCAUACAAUGUGGAUG - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381