Stem-loop pny-mir-24a-1

Accession

MI0034915

Description

Pundamilia nyererei pny-mir-24a-1 precursor miRNA

Sequence

13474 reads, 1170.0 reads per million, 7 experiments

UGCCUACUGAGCUGAUAAUCAGUccuacagaaucacUGGCUCAGUUCAGCAGGAACAG
..(((.(((((((((...(((((...........))))).))))))))).))).....

Structure

---UG   A         UAA     ccua 
     CCU CUGAGCUGA   UCAGU    c
     ||| |||||||||   |||||    a
     GGA GACUUGACU   GGUca    g
GACAA   C         --C     cuaa 

Annotation confidence Not enough data

Genome context

JH419211.1: 114903-114960 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pny-mir-24a-1

Mature pny-miR-24a-1-5p

• Accession: MIMAT0060359
• Description: Pundamilia nyererei pny-miR-24a-1-5p mature miRNA
• Sequence: 1 - UGCCUACUGAGCUGAUAAUCAGU - 23
• Evidence: experimental ; Illumina [1]

Mature pny-miR-24a-3p

• Accession: MIMAT0042935
• Description: Pundamilia nyererei pny-miR-24a-3p mature miRNA
• Sequence: 37 - UGGCUCAGUUCAGCAGGAACAG - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381