Stem-loop pny-mir-338-3

Accession

MI0034922

Description

Pundamilia nyererei pny-mir-338-3 precursor miRNA

Sequence

1196 reads, 102.0 reads per million, 7 experiments

AACAAUAUCCUGGUGCUGCCUGAGUgcucccuaaagacUCCAGCAUCAGUGAUUUUGUUG
(((((.((((((((((((...((((.((......))))))))))))))).))).))))).

Structure

-     U   -         CCU    g  cc 
 AACAA AUC CUGGUGCUG   GAGU cu  c
 ||||| ||| |||||||||   |||| ||   
 UUGUU UAG GACUACGAC   CUca ga  u
G     U   U         ---    -  aa 

Annotation confidence High

Genome context

JH419222.1: 150107-150166 [-]

Mature pny-miR-338-3-5p

• Accession: MIMAT0060368
• Description: Pundamilia nyererei pny-miR-338-3-5p mature miRNA
• Sequence: 1 - AACAAUAUCCUGGUGCUGCCUGAGU - 25
• Evidence: experimental ; Illumina [1]

Mature pny-miR-338-3p

• Accession: MIMAT0042940
• Description: Pundamilia nyererei pny-miR-338-3p mature miRNA
• Sequence: 39 - UCCAGCAUCAGUGAUUUUGUUG - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381