Stem-loop pny-mir-338-1

Accession

MI0034924

Description

Pundamilia nyererei pny-mir-338-1 precursor miRNA

Sequence

1506 reads, 132.0 reads per million, 7 experiments

AACAACAUCCUGGUGCUGCCUGAGUaguugucacaaacUCCAGCAUCAGUGAUUUUGUUG
(((((.((((((((((((...((((...........))))))))))))).))).))))).

Structure

-     C   -         CCU    aguu 
 AACAA AUC CUGGUGCUG   GAGU    g
 ||||| ||| |||||||||   ||||    u
 UUGUU UAG GACUACGAC   CUca    c
G     U   U         ---    aaca 

Annotation confidence High

Genome context

JH419363.1: 1334556-1334615 [-]

Mature pny-miR-338-1-5p

• Accession: MIMAT0060369
• Description: Pundamilia nyererei pny-miR-338-1-5p mature miRNA
• Sequence: 1 - AACAACAUCCUGGUGCUGCCUGAGU - 25
• Evidence: experimental ; Illumina [1]

Mature pny-miR-338-3p

• Accession: MIMAT0042940
• Description: Pundamilia nyererei pny-miR-338-3p mature miRNA
• Sequence: 39 - UCCAGCAUCAGUGAUUUUGUUG - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381