Stem-loop pny-mir-20b

Accession

MI0034929

Description

Pundamilia nyererei pny-mir-20b precursor miRNA

Sequence

4464 reads, 390.0 reads per million, 7 experiments

CAAAGUGCUCACAGUGCAGGUAGuaaacguucaucuACUGCAGUUUGUGCACUUGGGG
..((((((.((.(.(((((.(((...........)))))))).).)).))))))....

Structure

--CA      U  C G     G   uaaa 
    AAGUGC CA A UGCAG UAG    c
    |||||| || | ||||| |||    g
    UUCACG GU U ACGUC Auc    u
GGGG      U  U G     -   uacu 

Annotation confidence High

Genome context

JH419206.1: 4457251-4457308 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pny-mir-20b

Mature pny-miR-20b-5p

• Accession: MIMAT0042943
• Description: Pundamilia nyererei pny-miR-20b-5p mature miRNA
• Sequence: 1 - CAAAGUGCUCACAGUGCAGGUAG - 23
• Evidence: experimental ; Illumina [1]

Mature pny-miR-20b-3p

• Accession: MIMAT0060372
• Description: Pundamilia nyererei pny-miR-20b-3p mature miRNA
• Sequence: 37 - ACUGCAGUUUGUGCACUUGGGG - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381