Stem-loop pny-mir-338-2

Accession

MI0034930

Description

Pundamilia nyererei pny-mir-338-2 precursor miRNA

Sequence

228 reads, 17.0 reads per million, 7 experiments

AACAACAUCCUGAUGCUGUCUGGGUguguaaagcagaacUCCAGCAUCAGUGAUUUUGUUG
(((((.((((((((((((...((((.(((...)))..))))))))))))).))).))))).

Structure

-     C   -         UCU    -g   a 
 AACAA AUC CUGAUGCUG   GGGU  ugu  
 ||||| ||| |||||||||   ||||  ||| a
 UUGUU UAG GACUACGAC   CUca  acg  
G     U   U         ---    ag   a 

Annotation confidence Not enough data

Genome context

JH419210.1: 1524401-1524461 [+]

Mature pny-miR-338-2-5p

• Accession: MIMAT0060370
• Description: Pundamilia nyererei pny-miR-338-2-5p mature miRNA
• Sequence: 1 - AACAACAUCCUGAUGCUGUCUGGGU - 25
• Evidence: experimental ; Illumina [1]

Mature pny-miR-338-3p

• Accession: MIMAT0042940
• Description: Pundamilia nyererei pny-miR-338-3p mature miRNA
• Sequence: 40 - UCCAGCAUCAGUGAUUUUGUUG - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381