Stem-loop pny-let-7b-1

Accession

MI0034933

Description

Pundamilia nyererei pny-let-7b-1 precursor miRNA

Sequence

27550 reads, 2413.0 reads per million, 7 experiments

UGAGGUAGUAGGUUGUGUGGUUucaggguugugauuuuaccccaucaggagcuaaCUAUACAACCUACUGCCUUCCc
.(((((((((((((((((((((...((.((.((((........)))).)).)))))))))))))))))))))))...

Structure

--U                     uca  g  g    uuu 
   GAGGUAGUAGGUUGUGUGGUU   gg uu ugau   a
   |||||||||||||||||||||   || || ||||    
   UUCCGUCAUCCAACAUAUCaa   uc ag acua   c
cCC                     ---  g  g    ccc 

Annotation confidence High

Genome context

JH419219.1: 2417347-2417423 [+]

Mature pny-let-7b-5p

• Accession: MIMAT0042946
• Description: Pundamilia nyererei pny-let-7b-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAGGUUGUGUGGUU - 22
• Evidence: experimental ; Illumina [1]

Mature pny-let-7b-1-3p

• Accession: MIMAT0060373
• Description: Pundamilia nyererei pny-let-7b-1-3p mature miRNA
• Sequence: 56 - CUAUACAACCUACUGCCUUCC - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381