miRBase entry: pny-mir-138-2

Stem-loop pny-mir-138-2


Accession
MI0034941
Description
Pundamilia nyererei pny-mir-138-2 precursor miRNA


Sequence

999 reads, 79.0 reads per million, 7 experiments
AGCUGGUGUUGUGAAUCAGGCCGcugaagugucacgcacgGCUUUUUCACAACACCAGGGUu
..(((((((((((((..((((((((((....))).))..))))).)))))))))))))....

Structure
--AG             UC     --  -   a 
    CUGGUGUUGUGAA  AGGCC  Gc uga g
    |||||||||||||  |||||  || |||  
    GACCACAACACUU  UUCGg  cg acu u
uUGG             -U     ca  c   g 


Annotation confidence High
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Genome context
JH419683.1: 143173-143234 [+]

Database links

Mature pny-miR-138-5p

Accession MIMAT0042916
Description Pundamilia nyererei pny-miR-138-5p mature miRNA
Sequence 1 - AGCUGGUGUUGUGAAUCAGGCCG - 23
Evidence experimental
Illumina [1]

Mature pny-miR-138-2-3p

Accession MIMAT0060344
Description Pundamilia nyererei pny-miR-138-2-3p mature miRNA
Sequence 41 - GCUUUUUCACAACACCAGGGU - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381