Stem-loop pny-mir-23a-2

Accession

MI0034946

Description

Pundamilia nyererei pny-mir-23a-2 precursor miRNA

Sequence

3807 reads, 328.0 reads per million, 7 experiments

GGGUUCCUGGCACCGUGAUUUgaugcacaaagagaaacaaaaAUCACAUUGCCAGGGAUUUCC
.(((((((((((..(((((((...................)))))))..)))))))))))...

Structure

--G           CC       gaugcaca 
   GGUUCCUGGCA  GUGAUUU        a
   |||||||||||  |||||||        a
   UUAGGGACCGU  CACUAaa        g
CCU           UA       aacaaaga 

Annotation confidence Not enough data

Genome context

JH419388.1: 1079466-1079528 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pny-mir-23a-2

Mature pny-miR-23a-2-5p

• Accession: MIMAT0060382
• Description: Pundamilia nyererei pny-miR-23a-2-5p mature miRNA
• Sequence: 1 - GGGUUCCUGGCACCGUGAUUU - 21
• Evidence: experimental ; Illumina [1]

Mature pny-miR-23a-3p

• Accession: MIMAT0042955
• Description: Pundamilia nyererei pny-miR-23a-3p mature miRNA
• Sequence: 43 - AUCACAUUGCCAGGGAUUUCC - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381