Stem-loop pny-mir-301b-2

Accession

MI0034947

Description

Pundamilia nyererei pny-mir-301b-2 precursor miRNA

Sequence

1231 reads, 96.0 reads per million, 7 experiments

GCUUUGACGAUGUUGCACUACUguaucaucgcugaagCAGUGCAAUAGUAUUGUCAUAGC
(((.(((((((((((((((...((.(((....))).))))))))))...))))))).)))

Structure

   U       ---        ACU  a   u 
GCU UGACGAU   GUUGCACU   gu uca c
||| |||||||   ||||||||   || |||  
CGA ACUGUUA   UAACGUGA   Cg agu g
   U       UGA        ---  a   c 

Annotation confidence High

Genome context

JH419372.1: 1324428-1324487 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pny-mir-301b-2

Mature pny-miR-301b-2-5p

• Accession: MIMAT0060339
• Description: Pundamilia nyererei pny-miR-301b-2-5p mature miRNA
• Sequence: 1 - GCUUUGACGAUGUUGCACUACU - 22
• Evidence: experimental ; Illumina [1]

Mature pny-miR-301b-3p

• Accession: MIMAT0042959
• Description: Pundamilia nyererei pny-miR-301b-3p mature miRNA
• Sequence: 38 - CAGUGCAAUAGUAUUGUCAUAGC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381