Stem-loop pny-mir-23a-3

Accession

MI0034949

Description

Pundamilia nyererei pny-mir-23a-3 precursor miRNA

Sequence

3827 reads, 330.0 reads per million, 7 experiments

GGAUUCCUGGCAGAGUGAUUUgguugugauauaauguaaAUCACAUUGCCAGGGAUUUCC
.((((((((((((.(((((((((((((...))))).)))))))).))))))))))))...

Structure

--G            A        -     g 
   GAUUCCUGGCAG GUGAUUUg guugu  
   |||||||||||| |||||||| ||||| a
   UUAGGGACCGUU CACUAaau uaaua  
CCU            A        g     u 

Annotation confidence High

Genome context

JH419326.1: 1515529-1515588 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from pny-mir-23a-3

Mature pny-miR-23a-3-5p

• Accession: MIMAT0060383
• Description: Pundamilia nyererei pny-miR-23a-3-5p mature miRNA
• Sequence: 1 - GGAUUCCUGGCAGAGUGAUUU - 21
• Evidence: experimental ; Illumina [1]

Mature pny-miR-23a-3p

• Accession: MIMAT0042955
• Description: Pundamilia nyererei pny-miR-23a-3p mature miRNA
• Sequence: 40 - AUCACAUUGCCAGGGAUUUCC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381