miRBase entry: pny-mir-24a-3

Stem-loop pny-mir-24a-3


Accession
MI0034962
Description
Pundamilia nyererei pny-mir-24a-3 precursor miRNA


Sequence

3920 reads, 328.0 reads per million, 7 experiments
GUGCUUUCUGAGCUGACAGCAGUuugaucaaauacacUGGCUCAGUUCAGCAGGAAC
...(((.(((((((((...((((.((......)).))))..))))))))).)))...

Structure
GUG   U         CAG    u  au 
   CUU CUGAGCUGA   CAGU ug  c
   ||| |||||||||   |||| ||   
   GGA GACUUGACU   GUca au  a
CAA   C         -CG    c  aa 


Annotation confidence High
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Genome context
JH419221.1: 2777566-2777622 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from pny-mir-24a-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pny-miR-24a-3-5p

Accession MIMAT0060360
Description Pundamilia nyererei pny-miR-24a-3-5p mature miRNA
Sequence 1 - GUGCUUUCUGAGCUGACAGCAGU - 23
Evidence experimental
Illumina [1]

Mature pny-miR-24a-3-3p

Accession MIMAT0060788
Description Pundamilia nyererei pny-miR-24a-3-3p mature miRNA
Sequence 38 - UGGCUCAGUUCAGCAGGAAC - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381