Stem-loop pny-mir-10c

Accession

MI0034967

Description

Pundamilia nyererei pny-mir-10c precursor miRNA

Sequence

128998 reads, 9977.0 reads per million, 7 experiments

UACCCUGUAGAUCCGGAUUUGUguaaaaaucauuaauaaaaucACAAAUUCGCUUCUAGGGGAGU
...(((.((((..((((((((((...................))))))))))..)))).)))...

Structure

UAC   G    UC          uaaaaauc 
   CCU UAGA  CGGAUUUGUg        a
   ||| ||||  ||||||||||        u
   GGG AUCU  GCUUAAACAc        u
UGA   G    UC          uaaaauaa 

Annotation confidence High

Genome context

JH419398.1: 1024358-1024422 [-]

Mature pny-miR-10c-5p

• Accession: MIMAT0042968
• Description: Pundamilia nyererei pny-miR-10c-5p mature miRNA
• Sequence: 1 - UACCCUGUAGAUCCGGAUUUGU - 22
• Evidence: experimental ; Illumina [1]

Mature pny-miR-10c-3p

• Accession: MIMAT0060385
• Description: Pundamilia nyererei pny-miR-10c-3p mature miRNA
• Sequence: 44 - ACAAAUUCGCUUCUAGGGGAGU - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381