Stem-loop pny-mir-10d

Accession

MI0034973

Description

Pundamilia nyererei pny-mir-10d precursor miRNA

Sequence

55943 reads, 4404.0 reads per million, 7 experiments

CACCCUGUAGAUCCGAAUUUGUguaaauacagcagcagccaCAAAUUCGCAUCUUGGGGAGU
..(((((.((((.((((((((((........((....)))))))))))).)))))))))...

Structure

-CA     U    C          uaaauaca  a 
   CCCUG AGAU CGAAUUUGUg        gc g
   ||||| |||| ||||||||||        ||  
   GGGGU UCUA GCUUAAACac        cg c
UGA     -    C          --------  a 

Annotation confidence High

Genome context

JH419222.1: 2060631-2060692 [+]

Mature pny-miR-10d-5p

• Accession: MIMAT0042970
• Description: Pundamilia nyererei pny-miR-10d-5p mature miRNA
• Sequence: 1 - CACCCUGUAGAUCCGAAUUUGU - 22
• Evidence: experimental ; Illumina [1]

Mature pny-miR-10d-3p

• Accession: MIMAT0060386
• Description: Pundamilia nyererei pny-miR-10d-3p mature miRNA
• Sequence: 42 - CAAAUUCGCAUCUUGGGGAGU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381