Stem-loop pny-mir-15b

Accession

MI0034979

Description

Pundamilia nyererei pny-mir-15b precursor miRNA

Literature search

1 open access papers mention pny-mir-15b
(1 sentences)

Sequence

9108 reads, 790.0 reads per million, 7 experiments

UAGCAGCGCAUCAUGGUUUGAaacaauguggaaaaggugCGAACCAUAAUUUGCUGCUUUA
.(((((((.((.((((((((..((..(......)..)).)))))))).)).)))))))...

Structure

--U       C  C        Aa  aa gu 
   AGCAGCG AU AUGGUUUG  ac  u  g
   ||||||| || ||||||||  ||  |   
   UCGUCGU UA UACCAAGC  ug  a  g
AUU       U  A        -g  ga aa 

Annotation confidence High

Genome context

JH419322.1: 1132042-1132102 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-15b

Mature pny-miR-15b-5p

• Accession: MIMAT0042975
• Description: Pundamilia nyererei pny-miR-15b-5p mature miRNA
• Sequence: 1 - UAGCAGCGCAUCAUGGUUUGA - 21
• Evidence: experimental ; Illumina [1]

Mature pny-miR-15b-3p

• Accession: MIMAT0060391
• Description: Pundamilia nyererei pny-miR-15b-3p mature miRNA
• Sequence: 40 - CGAACCAUAAUUUGCUGCUUUA - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381