Stem-loop pny-mir-150

Accession

MI0034992

Description

Pundamilia nyererei pny-mir-150 precursor miRNA

Literature search

1 open access papers mention pny-mir-150
(1 sentences)

Sequence

361 reads, 30.0 reads per million, 7 experiments

ACUCCCAAUCCUUGUACCAGUGUCUugacaccagugaCGCUGGACGGGUUUUGGGGGGGc
.(((((((..(((((.(((((((((((....))).)))))))))))))..)))))))...

Structure

--A       UC     A        -   a 
   CUCCCAA  CUUGU CCAGUGUC Uug c
   |||||||  ||||| |||||||| |||  
   GGGGGUU  GGGCA GGUCGCag gac a
cGG       UU     -        u   c 

Annotation confidence High

Genome context

JH419286.1: 2442182-2442241 [-]

Mature pny-miR-150-5p

• Accession: MIMAT0042987
• Description: Pundamilia nyererei pny-miR-150-5p mature miRNA
• Sequence: 1 - ACUCCCAAUCCUUGUACCAGUGUCU - 25
• Evidence: experimental ; Illumina [1]

Mature pny-miR-150-3p

• Accession: MIMAT0060402
• Description: Pundamilia nyererei pny-miR-150-3p mature miRNA
• Sequence: 38 - CGCUGGACGGGUUUUGGGGGGG - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381