Stem-loop pny-mir-430a-1

Accession

MI0035010

Description

Pundamilia nyererei pny-mir-430a-1 precursor miRNA

Sequence

9605 reads, 825.0 reads per million, 7 experiments

ACGGCAACAUAGGCACUUAUUugaauucugaauauagUAAGUGCUGAUUGUUGUUGUGU
(((((((((..((((((((((..............))))))))))...)))))))))..

Structure

--         -UA          ugaauu 
  ACGGCAACA   GGCACUUAUU      c
  |||||||||   ||||||||||       
  UGUUGUUGU   UCGUGAAUga      u
UG         UAG          uauaag 

Annotation confidence High

Genome context

JH421421.1: 357-415 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from pny-mir-430a-1

Mature pny-miR-430a-1-5p

• Accession: MIMAT0060411
• Description: Pundamilia nyererei pny-miR-430a-1-5p mature miRNA
• Sequence: 1 - ACGGCAACAUAGGCACUUAUU - 21
• Evidence: experimental ; Illumina [1]

Mature pny-miR-430a-3p

• Accession: MIMAT0043004
• Description: Pundamilia nyererei pny-miR-430a-3p mature miRNA
• Sequence: 38 - UAAGUGCUGAUUGUUGUUGUGU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381