Stem-loop pny-mir-219a

Accession

MI0035014

Description

Pundamilia nyererei pny-mir-219a precursor miRNA

Sequence

1198 reads, 103.0 reads per million, 7 experiments

UGAUUGUCCAAACGCAAUUCUUgaguaaacucauauucaaccccaAGAAUUGUGUAUGGACAUCUGU
.(((.(((((.((((((((((((....................)))))))))))).))))))))...

Structure

--U   U     A            aguaaacuc 
   GAU GUCCA ACGCAAUUCUUg         a
   ||| ||||| ||||||||||||          
   CUA CAGGU UGUGUUAAGAac         u
UGU   -     A            cccaacuua 

Annotation confidence High

Genome context

JH419237.1: 3612121-3612187 [-]

Mature pny-miR-219a-5p

• Accession: MIMAT0060415
• Description: Pundamilia nyererei pny-miR-219a-5p mature miRNA
• Sequence: 1 - UGAUUGUCCAAACGCAAUUCUU - 22
• Evidence: experimental ; Illumina [1]

Mature pny-miR-219a-3p

• Accession: MIMAT0043007
• Description: Pundamilia nyererei pny-miR-219a-3p mature miRNA
• Sequence: 46 - AGAAUUGUGUAUGGACAUCUGU - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381