Stem-loop pny-mir-725

Accession

MI0035025

Description

Pundamilia nyererei pny-mir-725 precursor miRNA

Literature search

1 open access papers mention pny-mir-725
(5 sentences)

Sequence

71456 reads, 6175.0 reads per million, 7 experiments

AGCUGGAAACUUUGCCUGGGAAUuucugugcucaaauUUCAGUCAUUGUUUCUGGUCGU
.(((((((((..((.((((.(((((........))))))))).))..)))))))))...

Structure

--A         UU  C    G     cug 
   GCUGGAAAC  UG CUGG AAUuu   u
   |||||||||  || |||| |||||    
   UGGUCUUUG  AC GACU Uuaaa   g
UGC         UU  U    -     cuc 

Annotation confidence High

Genome context

JH419388.1: 373278-373336 [-]

Mature pny-miR-725-5p

• Accession: MIMAT0060417
• Description: Pundamilia nyererei pny-miR-725-5p mature miRNA
• Sequence: 1 - AGCUGGAAACUUUGCCUGGGAAU - 23
• Evidence: experimental ; Illumina [1]

Mature pny-miR-725-3p

• Accession: MIMAT0043022
• Description: Pundamilia nyererei pny-miR-725-3p mature miRNA
• Sequence: 38 - UUCAGUCAUUGUUUCUGGUCGU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381