Stem-loop pny-mir-449a

Accession

MI0035026

Description

Pundamilia nyererei pny-mir-449a precursor miRNA

Sequence

78 reads, 7.0 reads per million, 7 experiments

AGGCAGUGUCUUGUUAGCUGGUaguuucuuccugugccagcucaccugcugcugcccuc
.(((((((.(..((.((((((((...........)))))))).))..).)))))))...

Structure

--A       U UU  U        guuu 
   GGCAGUG C  GU AGCUGGUa    c
   ||||||| |  || ||||||||    u
   ccgucgu g  ca ucgaccgu    u
cuc       c uc  c        gucc 

Annotation confidence Not enough data

Genome context

JH419287.1: 1241911-1241969 [+]

Mature pny-miR-449a-5p

• Accession: MIMAT0043023
• Description: Pundamilia nyererei pny-miR-449a-5p mature miRNA
• Sequence: 1 - AGGCAGUGUCUUGUUAGCUGGU - 22
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381