Stem-loop pny-mir-10566

Accession

MI0035028

Description

Pundamilia nyererei pny-mir-10566 precursor miRNA

Sequence

4228 reads, 376.0 reads per million, 7 experiments

GAGCCAGACCGCAGCCGGAGCAucacccauggagcacgacgCUCCGGCUGCGGUCCGACUCGC
(((.(.(((((((((((((((.((.............)).))))))))))))))).).)))..

Structure

--   C A               A  accca 
  GAG C GACCGCAGCCGGAGC uc     u
  ||| | ||||||||||||||| ||     g
  CUC G CUGGCGUCGGCCUCg ag     g
CG   A C               c  cacga 

Annotation confidence High

Genome context

JH419531.1: 135997-136059 [+]

Mature pny-miR-10566-5p

• Accession: MIMAT0060418
• Description: Pundamilia nyererei pny-miR-10566-5p mature miRNA
• Sequence: 1 - GAGCCAGACCGCAGCCGGAGCA - 22
• Evidence: experimental ; Illumina [1]

Mature pny-miR-10566-3p

• Accession: MIMAT0043025
• Description: Pundamilia nyererei pny-miR-10566-3p mature miRNA
• Sequence: 42 - CUCCGGCUGCGGUCCGACUCGC - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381