Stem-loop pny-mir-10553

Accession

MI0035031

Description

Pundamilia nyererei pny-mir-10553 precursor miRNA

Sequence

266565 reads, 23169.0 reads per million, 7 experiments

GUGCCAUAUCUGACUGUACGCAauuguaucauuauauugcguuaucagcgauauagcaaug
.(((.(((((.(.(((.(((((((.(((....))))))))))...))))))))).)))...

Structure

--G   C     U A   --U       u   u 
   UGC AUAUC G CUG   ACGCAau gua c
   ||| ||||| | |||   ||||||| |||  
   acg uauag c gac   ugcguua uau a
gua   a     - -   uau       -   u 

Annotation confidence Not enough data

Genome context

JH419595.1: 213659-213719 [+]

Mature pny-miR-10553-5p

• Accession: MIMAT0043028
• Description: Pundamilia nyererei pny-miR-10553-5p mature miRNA
• Sequence: 1 - GUGCCAUAUCUGACUGUACGCA - 22
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381