Stem-loop pny-mir-10544

Accession

MI0035034

Description

Pundamilia nyererei pny-mir-10544 precursor miRNA

Literature search

1 open access papers mention pny-mir-10544
(1 sentences)

Sequence

116 reads, 10.0 reads per million, 7 experiments

UAGGCGUGUCACUGCGUGUCACAgucacugcuUGCGCACGGGGCCACGCCCUG
..((((((...((.(((((((.(((....))))).))))).)).))))))...

Structure

-UA      UCA  G     -  C   c 
   GGCGUG   CU CGUGU CA Agu a
   ||||||   || ||||| || |||  
   CCGCAC   GG GCACG GU ucg c
GUC      --C  G     C  -   u 

Annotation confidence High

Genome context

JH419214.1: 845985-846037 [-]

Mature pny-miR-10544-5p

• Accession: MIMAT0043031
• Description: Pundamilia nyererei pny-miR-10544-5p mature miRNA
• Sequence: 1 - UAGGCGUGUCACUGCGUGUCACA - 23
• Evidence: experimental ; Illumina [1]

Mature pny-miR-10544-3p

• Accession: MIMAT0060421
• Description: Pundamilia nyererei pny-miR-10544-3p mature miRNA
• Sequence: 33 - UGCGCACGGGGCCACGCCCUG - 53
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381