miRBase entry: pny-mir-430b

Stem-loop pny-mir-430b


Accession
MI0035035
Description
Pundamilia nyererei pny-mir-430b precursor miRNA


Sequence

9417 reads, 809.0 reads per million, 7 experiments
aucgcgacaauauagguaguuauuugaauucugaauacagUAAGUGCUGAUUGUUGUUGUGU
..((((((((((..((((.(((((..............))))).))))...)))))))))).

Structure
au          -ua    g     ugaauu 
  cgcgacaaua   ggua uuauu      c
  ||||||||||   |||| |||||       
  GUGUUGUUGU   UCGU AAUga      u
-U          UAG    G     cauaag 


Annotation confidence Not enough data
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Genome context
JH421421.1: 3623-3684 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from pny-mir-430b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pny-miR-430b-3p

Accession MIMAT0043032
Description Pundamilia nyererei pny-miR-430b-3p mature miRNA
Sequence 41 - UAAGUGCUGAUUGUUGUUGUGU - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381